
ARNAB MUKHERJEE LAB
Indian Institute of Science education & Research, Pune

Ph. D. positions are available for students motivated to do computational research in chemical and biological physics.
About us
RECENT
2025
​
-
Our latest publication in Chemical Science: "Water Entropy at the Threonine-rich Surface of Antifreeze and Ice-nucleating Proteins: Small Changes make Big Difference"
https://doi.org/10.1039/D4SC08383K
​
2024
​​
-
Prathith's work on "AlphaMut: A Deep Reinforcement Learning Model to Suggest Helix-Disrupting Mutations. " accepted and published online in JCTC special issue:
https://doi.org/10.1021/acs.jctc.4c01387
​​​
-
Bikirna and Hridya's work on using Memory effects to explain Internal Friction is published in JPCB:
https://doi.org/10.1021/acs.jpcb.4c05394
​
-
Amal's work on beta-catenin published in PCCP: Unraveling the folding-assisted unbinding mechanism of TCF with its binding partner ß-catenin.
https://doi.org/10.1039/D4CP01451K
​
​
-
Amal successfully defended his Ph.D. thesis
​
-
SPOTLIGHT: Sreyas's work on combining Reinforcement Learning with Physics based de novo Drug Design accepted in Digital Discovery.
https://doi.org/10.1039/D3DD00194F
​
​
2023
​​
-
Our Collaborative work accepted in Chemical Science:
"Engineered vitamin E-tethered non-immunogenic facial lipopeptide for developing improved siRNA based
combination therapy against metastatic breast cancer."
Chemical Science (accepted).
https://doi.org/10.1039/D3SC01071F
​​



RESEARCH INTERESTS
* Single water entropy
* Protein DNA intercalation
* Origin of internal friction
* DNA Drug Recrossing
* Origin of azeotrope mixture
* Drug Design
* Conformation change in prion protein
* Bending Mechanism of organic crystals
* Curvature of Biological Macro molecules
* DNA conformation using Machine learning
Research Efforts at IISER Pune against COVID-19
Our work on COVID-19
Atomistic de-novo inhibitor generation guided drug repurposing for SARS-CoV-2 spike protein with free energy validation by well-tempered metadynamics
